_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-26
 Query name: gi|1039408233|ref|XP_008416550.2| PREDICTED: selenoprotein P isoform X1 [Poecilia reticulata]
 Query range: 1-389  (total 389)

 Target: /data/www-rg/seblastian_results/994789123/tempfiles/temptarget.fasta
 Chromosome: OMLM01003444.1:subseq_0,58646_ Strand: -
 Positions:
 -Exon 1  8519         8721
 -Exon 2  8042         8254
 -Exon 3  7797         7914
 -Exon 4  7043         7681

 Redox box: YES

Query   MWVRLSLLLTLCLLHGGGAESEGGGPRCQPPSTWMIGEVEPMKGTAGQVTVVALLKASULFCLVQASR <---Intron---> IDGLRQKLETQGLNDV
        ||  |||||||||||||||||||||||||    | |||||||    | |||||| /|/ ||||/|||| <   264bp    > /| |||||| ||| ||
Target  MWACLSLLLTLCLLHGGGAESEGGGPRCQLSPAWKIGEVEPMTQAMGHVTVVALFQANCLFCLLQASR                LDILRQKLERQGLKDV
        atgtcacccactcccgggggaggggcctcctcgtaaggggcaacgagcgagggctcgatctttccgta                cgacccacgacgcagg
        tgcgtgtttctgttagggcagagggcggatcccgatgatactcactgatcttcttacagttgttaccg                tattgaatagagtaat
        gggcccccccccgctgcaagtgatgtctaaaaagaaagggggagagccggggttcgccctctgggac                agctgcgaggagtggtg
                                                                  *                                         

Query   VYMVINHQGEQAQRLHPMLAERLSDKISLYKQGEQQPDVWQALNGKKDDFIIYDR <---Intron---> CGRLTHHISLPYSVIGHGHIESAIKEAYC
        ||||/||||/||| || ||| /||/ ||||||  /|||||  | |/||| /|||| <   127bp    > ||||||||||||//|| ||/| ||/||||
Target  VYMVVNHQGQQAQLLHFMLAAKLSESISLYKQDVEQPDVWMTLRGQKDDLLIYDR                CGRLTHHISLPYAIIGQGHVEGAIREAYC
        gtaggaccgccgcccctacggactgaatctacgggccggtaacagcaggtcatga                tgccaccatcctgaagcgcggggaaggtt
        tatttaaagaacattatttccatcagtctaaaataacatgtctggaaaatttaag                gggtcaatctcacttgagatagctgacag
        gcgtgccgggaagcgccggagggagccagtgacgaatccggagaagatcacttc                atttcccctgtgccctaacttgttcagcct
                                                                                                            

Query   NRMCGACSHE <---Intron---> TAETPEGCRATPNAQPEADAPAAVGDNTEHDHRR--HHGHGHHGHGHHGHGHHGHGHHGQHGH-HHHRHHGDHH
        ||/|| |//| <   115bp    > / |/|| ||    ||| ||    | //|/| | /  || | || ||||   |||||    | | | |  ||  |
Target  NRLCGDCTYE                STESPEECRERTRAQPGADGTPTVEEDTQHGHSQDHHHHHPHHHHGHHHGLHHGHGDGLDHNHDHQHDGHGHDH
        acttggtatg                aagacggtagaacgccggggacaggggaccgcacgccccccccccgcccgcccgcgggcgcacgcccggcgcgc
        agtggagcaa                gcagcaaggagcgcacgcagccctaaacaagagaaaaaaacaaaagaaagtaagagagtaaaaaaaaagagaaa
        ctatgccatg                ttgcaggcagactagttatccaaagactgttctattttttttttttcttgtctttttctttctttattccctct
                                                                                                            

Query   GHYGDLE-QSQQGAGQDHGQHVFDLP-QLQQAVDTEQLLQEAVAAPVRPUVAEKGRUKSKFTUQGTAGSENETVPKASUCUHURRVFGEAGSEQSLGLUH
        |     /  | ||  |        ||  | |   /  | / /  |  ||  ||  /||||| || ||||||| || |||||||||/||/||||| / |||
Target  GQSQSQQGVSHQGHEQGVEMSQRQLPVDLGQMQQSVHLPEISQQAHERP-RAENVKUKSKFRUQWTAGSENE-VP-ASUCUHURRLFGDAGSEQPVILUH
        gcacaccggaccgcgcgggatcacccggtgcacctgctcgatccgcgac-cggagatatatatctaggtgag-gc-gatttctcactggggagccgactc
        gagagaagtgaagaaagtatcagatctatgataactatcatcaacaagc-gcaatagacatggagccgcaaa-tc-cggggagggttgacggaactttga
        aatatgatttcggtagttggtagaatatacgggaagcaaaaaggctggt-aagcggaaagcgaggaactata-ct-ccacacaaggttcaatggactcac
                                                         *      *     *               * * *               * 

Query   CEEGLPASUQUQGLTSEAATNVRETUQURMPPAEUQQPQPDQ
        |/| ||||||  ||   ||/ ||||||||   |/||||/| |
Target  CDEALPASUQCHGLAGVAASEVRETUQURSHSADUQQPRPAQ
        tgggccgttctcgtgggggaggagatctctctggtcccccgc
        gaactcccgagagtcgtccgatgacgaggcaccagaacgcca
        ttgtatccagtcagatgactatggcagacgcttcaagtgacg
                * *              * *      *       
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 337 ; UGA-SECIS: 358

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = OMLM01003444.1:subseq_0,58646_ Strand = - Positions = 6705 - 6626
 Found by:  Infernal (score=24.46) Covels (score=23.27)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -20.38

         ..(((((((.........(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((((.......([[({{((((((([(.....-.........)])))))))}})]])......-.)))))))))..
 target  UGCUCUCUUCUUCCUUUAUGAAACCAGAUGCAGAAACU-AUGCUCUAGUGGCGUCUGUAUGAAGUCAGG-CAGGAGAGAGAG
                           ****           ^^^                       ****